The Pharmacopoeial Center has a well-developed organization, which includes: the Department of the State Pharmacopoeia of Ukraine, the Department of Validation and Reference Standards, the Laboratory of Pharmacopoeial Analysis, the Department of Experimental Support for the Development of Monographs on Herbal Drugs, the Department of Instrumental Methods of Analysis, the Department of General Pharmacology, as well as supporting economic and financial structures.

As of November 1, 2023, the Pharmacopoeial Center has 77 employees, of whom 29 hold scientific positions. Five colleagues have a Doctor of Sciences degree, and eleven colleagues hold a PhD degree, of which 1 is a professor, 7 are senior research associates, and 1 is a senior researcher.